Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02042 | Not Available | Positive | 2314895 - 2315569 | 25059.3 |
| 50s ribosomal protein l28 | EQ875_02043 | Not Available | Positive | 2315746 - 2315982 | 9034.13 |
| 50s ribosomal protein l33 | EQ875_02044 | Not Available | Positive | 2315997 - 2316164 | 6377.89 |
| hypothetical protein | EQ875_02045 | Not Available | Positive | 2316295 - 2316774 | 18127.3 |
| formamidopyrimidine-dna glycosylase | EQ875_02046 | Not Available | Positive | 2316799 - 2317608 | 29574.8 |
| udp-n-acetylglucosamine 4-epimerase | EQ875_02047 | Not Available | Positive | 2317744 - 2318748 | 37470.4 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-acetyltransferase | EQ875_02048 | Not Available | Negative | 2318792 - 2319523 | 27069.7 |
| phosphopantetheine adenylyltransferase | EQ875_02049 | Not Available | Negative | 2319616 - 2320104 | 18192.0 |
| hypothetical protein | EQ875_02050 | Not Available | Negative | 2320124 - 2321155 | 38122.0 |
| 3-deoxy-d-manno-octulosonic acid kinase | EQ875_02051 | Not Available | Positive | 2321247 - 2321951 | 27109.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


