Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(18)-2'-o)-methyltransferase | EQ875_02032 | Not Available | Negative | 2305371 - 2306081 | 26269.6 |
| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | EQ875_02033 | Not Available | Negative | 2306180 - 2308285 | 79109.7 |
| dna-directed rna polymerase subunit omega | EQ875_02034 | Not Available | Negative | 2308304 - 2308579 | 10104.0 |
| guanylate kinase | EQ875_02035 | Not Available | Negative | 2308632 - 2309258 | 23402.8 |
| hypothetical protein | EQ875_02036 | Not Available | Negative | 2309470 - 2310333 | 32710.2 |
| ribonuclease ph | EQ875_02037 | Not Available | Positive | 2310571 - 2311287 | 25793.2 |
| orotate phosphoribosyltransferase | EQ875_02038 | Not Available | Positive | 2311419 - 2312060 | 23276.8 |
| nucleoid occlusion factor slma | EQ875_02039 | Not Available | Negative | 2312149 - 2312739 | 22729.6 |
| deoxyuridine 5'-triphosphate nucleotidohydrolase | EQ875_02040 | Not Available | Negative | 2312942 - 2313397 | 16072.2 |
| coenzyme a biosynthesis bifunctional protein coabc | EQ875_02041 | Not Available | Negative | 2313408 - 2314631 | 43374.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


