Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase assembly protein ctag | EQ875_02012 | Not Available | Positive | 2284284 - 2284880 | 21529.9 |
| cytochrome c oxidase subunit 3 | EQ875_02013 | Not Available | Positive | 2284890 - 2285765 | 32692.6 |
| hypothetical protein | EQ875_02014 | Not Available | Negative | 2285769 - 2285975 | 7642.97 |
| hypothetical protein | EQ875_02015 | Not Available | Positive | 2286042 - 2286764 | 28420.8 |
| hypothetical protein | EQ875_02016 | Not Available | Positive | 2286748 - 2287338 | 21969.3 |
| heme a synthase | EQ875_02017 | Not Available | Positive | 2287348 - 2288397 | 38702.0 |
| protoheme ix farnesyltransferase | EQ875_02018 | Not Available | Positive | 2288390 - 2289295 | 33301.8 |
| dna damage-inducible protein f | EQ875_02019 | Not Available | Positive | 2289416 - 2290753 | 48971.0 |
| hypothetical protein | EQ875_02020 | Not Available | Positive | 2290870 - 2291253 | 14226.8 |
| fe/s biogenesis protein nfua | EQ875_02021 | Not Available | Negative | 2291339 - 2291923 | 21013.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


