Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol-3-phosphate regulon repressor | EQ875_02002 | Not Available | Positive | 2272208 - 2272969 | 28202.8 |
| aerobic glycerol-3-phosphate dehydrogenase | EQ875_02003 | Not Available | Positive | 2273186 - 2274703 | 56850.7 |
| hypothetical protein | EQ875_02004 | Not Available | Negative | 2274781 - 2275203 | 15772.4 |
| chorismate pyruvate-lyase | EQ875_02005 | Not Available | Positive | 2275372 - 2275914 | 20367.6 |
| 4-hydroxybenzoate octaprenyltransferase | EQ875_02006 | Not Available | Positive | 2275908 - 2276771 | 32021.2 |
| glycerol-3-phosphate acyltransferase | EQ875_02007 | Not Available | Negative | 2276866 - 2279316 | 92427.1 |
| lexa repressor | EQ875_02008 | Not Available | Positive | 2279685 - 2280311 | 22879.6 |
| hypothetical protein | EQ875_02009 | Not Available | Positive | 2280462 - 2281259 | 30491.9 |
| hypothetical protein | EQ875_02010 | Not Available | Positive | 2281502 - 2282647 | 42984.2 |
| cytochrome c oxidase subunit 1 | EQ875_02011 | Not Available | Positive | 2282658 - 2284274 | 59819.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


