Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01992 | Not Available | Positive | 2263341 - 2263583 | 9026.79 |
| hypothetical protein | EQ875_01993 | Not Available | Negative | 2263657 - 2263923 | 9973.06 |
| ribosomal rna small subunit methyltransferase d | EQ875_01994 | Not Available | Negative | 2263920 - 2264528 | 22860.2 |
| signal recognition particle receptor ftsy | EQ875_01995 | Not Available | Positive | 2264613 - 2266001 | 50321.2 |
| cell division atp-binding protein ftse | EQ875_01996 | Not Available | Positive | 2266005 - 2266676 | 25013.5 |
| cell division protein ftsx | EQ875_01997 | Not Available | Positive | 2266663 - 2267589 | 34117.1 |
| rna polymerase sigma factor rpoh | EQ875_01998 | Not Available | Positive | 2267735 - 2268598 | 32845.9 |
| thiosulfate sulfurtransferase glpe | EQ875_01999 | Not Available | Positive | 2269172 - 2269501 | 12345.4 |
| rhomboid protease glpg | EQ875_02000 | Not Available | Positive | 2269533 - 2270378 | 31898.1 |
| glycerol-3-phosphate transporter | EQ875_02001 | Not Available | Positive | 2270707 - 2272071 | 50596.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


