Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine/homoserine lactone efflux protein | EQ875_01982 | Not Available | Positive | 2253967 - 2254599 | 22460.0 |
| hypothetical protein | EQ875_01983 | Not Available | Negative | 2254851 - 2255327 | 18312.9 |
| hypothetical protein | EQ875_01984 | Not Available | Negative | 2255465 - 2256310 | 31474.5 |
| hca operon transcriptional activator hcar | EQ875_01985 | Not Available | Negative | 2256454 - 2257302 | 31755.7 |
| hypothetical protein | EQ875_01986 | Not Available | Negative | 2257415 - 2257597 | 6545.26 |
| p-aminobenzoyl-glutamate transport protein | EQ875_01987 | Not Available | Negative | 2257649 - 2259016 | 48205.8 |
| putative oxidoreductase | EQ875_01988 | Not Available | Positive | 2259490 - 2260212 | 25975.4 |
| o-acetyltransferase wech | EQ875_01989 | Not Available | Positive | 2260312 - 2261325 | 38640.9 |
| hypothetical protein | EQ875_01990 | Not Available | Negative | 2261335 - 2261667 | 12682.5 |
| hypothetical protein | EQ875_01991 | Not Available | Positive | 2262002 - 2262367 | 14321.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


