Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cryptochrome dash | EQ875_01962 | Not Available | Negative | 2233646 - 2234956 | 51542.8 |
| hypothetical protein | EQ875_01963 | Not Available | Negative | 2235027 - 2235356 | 12751.5 |
| hypothetical protein | EQ875_01964 | Not Available | Negative | 2235386 - 2235703 | 12632.5 |
| putative alkyl/aryl-sulfatase yjcs | EQ875_01965 | Not Available | Positive | 2235991 - 2237970 | 73278.6 |
| hth-type transcriptional regulator leuo | EQ875_01966 | Not Available | Negative | 2238118 - 2239023 | 34924.0 |
| putative alkyl/aryl-sulfatase yjcs | EQ875_01967 | Not Available | Negative | 2239131 - 2241086 | 72998.6 |
| hypothetical protein | EQ875_01968 | Not Available | Negative | 2241206 - 2242186 | 37338.6 |
| protein qmca | EQ875_01969 | Not Available | Positive | 2242470 - 2243390 | 33412.6 |
| inner membrane protein ybbj | EQ875_01970 | Not Available | Positive | 2243390 - 2243842 | 17022.0 |
| low specificity l-threonine aldolase | EQ875_01971 | Not Available | Negative | 2243936 - 2244940 | 36288.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


