Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| low affinity potassium transport system protein kup | EQ875_01942 | Not Available | Positive | 2207706 - 2209568 | 68959.8 |
| sensor protein kdpd | EQ875_01943 | Not Available | Positive | 2209636 - 2211102 | 54530.0 |
| kdp operon transcriptional regulatory protein kdpe | EQ875_01944 | Not Available | Positive | 2211095 - 2211790 | 26097.7 |
| hypothetical protein | EQ875_01945 | Not Available | Positive | 2211898 - 2212176 | 10614.1 |
| sec-independent protein translocase protein tata | EQ875_01946 | Not Available | Positive | 2212218 - 2212436 | 7871.6 |
| hypothetical protein | EQ875_01947 | Not Available | Negative | 2212775 - 2213419 | 24439.3 |
| pyrrolidone-carboxylate peptidase | EQ875_01948 | Not Available | Negative | 2213583 - 2214221 | 22714.1 |
| hypothetical protein | EQ875_01949 | Not Available | Positive | 2214592 - 2216136 | 55234.2 |
| n-alpha-acetyl-l-2,4-diaminobutyric acid deacetylase | EQ875_01950 | Not Available | Positive | 2216211 - 2217224 | 37553.9 |
| dimethyl sulfoxide/trimethylamine n-oxide reductase | EQ875_01951 | Not Available | Positive | 2217552 - 2220218 | 98560.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


