Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01932 | Not Available | Positive | 2196110 - 2198455 | 84583.6 |
| Trna-gly | Not Available | Not Available | Positive | 2198703 - 2198777 | Not Available |
| hypothetical protein | EQ875_01934 | Not Available | Positive | 2198977 - 2199540 | 20152.2 |
| hypothetical protein | EQ875_01935 | Not Available | Positive | 2199609 - 2199947 | 12955.5 |
| bifunctional protein hlde | EQ875_01936 | Not Available | Negative | 2199990 - 2200946 | 34634.5 |
| hypothetical protein | EQ875_01937 | Not Available | Negative | 2200946 - 2202343 | 49435.9 |
| hypothetical protein | EQ875_01938 | Not Available | Negative | 2202356 - 2203390 | 37007.0 |
| hth-type transcriptional repressor yvoa | EQ875_01939 | Not Available | Positive | 2203541 - 2204278 | 27422.6 |
| hypothetical protein | EQ875_01940 | Not Available | Positive | 2204630 - 2205454 | 32609.7 |
| major myo-inositol transporter iolt | EQ875_01941 | Not Available | Positive | 2205983 - 2207449 | 54098.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


