Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione synthetase | EQ875_01912 | Not Available | Negative | 2174807 - 2175889 | 40308.9 |
| hypothetical protein | EQ875_01913 | Not Available | Negative | 2175955 - 2176305 | 13229.2 |
| hth-type transcriptional regulator hdfr | EQ875_01914 | Not Available | Positive | 2176497 - 2177366 | 32562.0 |
| hypothetical protein | EQ875_01915 | Not Available | Positive | 2177580 - 2177750 | 6816.74 |
| hypothetical protein | EQ875_01916 | Not Available | Positive | 2178161 - 2178712 | 21396.6 |
| hypothetical protein | EQ875_01917 | Not Available | Positive | 2178785 - 2179948 | 43080.6 |
| hth-type transcriptional regulator nimr | EQ875_01918 | Not Available | Negative | 2179974 - 2180741 | 29236.2 |
| bicyclomycin resistance protein | EQ875_01919 | Not Available | Positive | 2180850 - 2181992 | 41275.9 |
| hypothetical protein | EQ875_01920 | Not Available | Positive | 2182140 - 2182415 | 10035.5 |
| hypothetical protein | EQ875_01921 | Not Available | Negative | 2182539 - 2183057 | 20570.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


