Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01872 | Not Available | Positive | 2082046 - 2082363 | 11725.8 |
| Trna-asp | Not Available | Not Available | Positive | 2082426 - 2082502 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 2082546 - 2082636 | Not Available |
| hypothetical protein | EQ875_01875 | Not Available | Negative | 2082765 - 2083556 | 29947.9 |
| hypothetical protein | EQ875_01876 | Not Available | Negative | 2083884 - 2084675 | 29632.6 |
| hypothetical protein | EQ875_01877 | Not Available | Positive | 2084926 - 2085261 | 12584.2 |
| aspartate-semialdehyde dehydrogenase 1 | EQ875_01878 | Not Available | Negative | 2085354 - 2086490 | 41518.2 |
| lysine-sensitive aspartokinase 3 | EQ875_01879 | Not Available | Negative | 2086647 - 2087996 | 48978.8 |
| hypothetical protein | EQ875_01880 | Not Available | Negative | 2087993 - 2088202 | 7667.49 |
| diaminobutyrate--2-oxoglutarate aminotransferase | EQ875_01881 | Not Available | Positive | 2088974 - 2090368 | 50259.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


