Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system transcriptional activator | EQ875_01852 | Not Available | Positive | 2060221 - 2061126 | 34958.9 |
| undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferase | EQ875_01853 | Not Available | Negative | 2061648 - 2063093 | 54489.4 |
| transcriptional activator protein czcr | EQ875_01854 | Not Available | Positive | 2063399 - 2064088 | 25909.4 |
| adaptive-response sensory-kinase sasa | EQ875_01855 | Not Available | Positive | 2064078 - 2065334 | 47561.9 |
| hypothetical protein | EQ875_01856 | Not Available | Positive | 2065815 - 2066114 | 10999.5 |
| hypothetical protein | EQ875_01857 | Not Available | Positive | 2066340 - 2067401 | 38391.2 |
| hypothetical protein | EQ875_01858 | Not Available | Positive | 2067545 - 2067844 | 10979.2 |
| hypothetical protein | EQ875_01859 | Not Available | Negative | 2068034 - 2068345 | 12300.5 |
| hypothetical protein | EQ875_01860 | Not Available | Negative | 2068471 - 2068746 | 10709.0 |
| hypothetical protein | EQ875_01861 | Not Available | Negative | 2069275 - 2070114 | 31399.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


