Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-(hydroxymethyl)glutathione dehydrogenase | EQ875_00085 | Not Available | Negative | 90419 - 91549 | 40246.5 |
| hth-type transcriptional regulator dmlr | EQ875_00086 | Not Available | Positive | 91772 - 92659 | 33419.4 |
| pp_00083 | EQ875_00087 | Not Available | Positive | 92695 - 93207 | Not Available |
| hypothetical protein | EQ875_00088 | Not Available | Negative | 93282 - 93428 | 5727.12 |
| membrane-bound lytic murein transglycosylase f | EQ875_00089 | Not Available | Negative | 93756 - 95252 | 56561.4 |
| phosphoribosylformylglycinamidine synthase | EQ875_00090 | Not Available | Positive | 95640 - 99545 | 142036.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 97481 - 97591 | Not Available |
| hypothetical protein | EQ875_00091 | Not Available | Positive | 99882 - 100295 | 15014.3 |
| nitrogen regulatory protein p-ii | EQ875_00092 | Not Available | Positive | 100362 - 100700 | 12520.2 |
| serine hydroxymethyltransferase | EQ875_00093 | Not Available | Positive | 101092 - 102342 | 45151.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


