Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligopeptide transport atp-binding protein oppd | EQ875_01840 | Not Available | Positive | 2046752 - 2047723 | 36032.9 |
| vitamin b12 import atp-binding protein btud | EQ875_01841 | Not Available | Positive | 2047749 - 2048750 | 37339.3 |
| hypothetical protein | EQ875_01842 | Not Available | Positive | 2048847 - 2050586 | 65746.3 |
| glucosamine kinase gspk | EQ875_01843 | Not Available | Positive | 2050579 - 2051472 | 31444.7 |
| beta-hexosaminidase | EQ875_01844 | Not Available | Positive | 2051474 - 2053411 | 73261.1 |
| n,n'-diacetylchitobiose phosphorylase | EQ875_01845 | Not Available | Positive | 2053444 - 2055849 | 89971.6 |
| phosphoglucomutase | EQ875_01846 | Not Available | Positive | 2055910 - 2057322 | 51961.1 |
| hypothetical protein | EQ875_01847 | Not Available | Positive | 2057617 - 2058000 | 14325.0 |
| Trna-asp | Not Available | Not Available | Positive | 2058260 - 2058336 | Not Available |
| hypothetical protein | EQ875_01851 | Not Available | Negative | 2059203 - 2060099 | 32291.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


