Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-sulfur cluster insertion protein erpa | EQ875_01830 | Not Available | Negative | 2032372 - 2032713 | 12022.1 |
| h(+)/cl(-) exchange transporter clca | EQ875_01831 | Not Available | Negative | 2032775 - 2034175 | 50106.6 |
| glutamate-1-semialdehyde 2,1-aminomutase | EQ875_01832 | Not Available | Positive | 2034536 - 2035828 | 45853.1 |
| hypothetical protein | EQ875_01833 | Not Available | Positive | 2036201 - 2037289 | 40100.1 |
| hypothetical protein | EQ875_01834 | Not Available | Negative | 2037230 - 2037460 | 8819.7 |
| ribosomal rna small subunit methyltransferase c | EQ875_01835 | Not Available | Positive | 2037489 - 2038508 | 37603.8 |
| sensor histidine kinase rcsc | EQ875_01836 | Not Available | Positive | 2038822 - 2042214 | 127218.0 |
| hypothetical protein | EQ875_01837 | Not Available | Positive | 2042915 - 2044591 | 63158.7 |
| dipeptide transport system permease protein dppb | EQ875_01838 | Not Available | Positive | 2044738 - 2045724 | 36536.5 |
| hypothetical protein | EQ875_01839 | Not Available | Positive | 2045727 - 2046752 | 36812.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


