Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase | EQ875_01820 | Not Available | Positive | 2017929 - 2019395 | 53173.4 |
| glutamate synthase | EQ875_01821 | Not Available | Positive | 2019619 - 2024079 | 163426.0 |
| glutamate synthase | EQ875_01822 | Not Available | Positive | 2024091 - 2025509 | 52152.3 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | EQ875_01823 | Not Available | Positive | 2025636 - 2026334 | 24765.8 |
| cobalamin biosynthesis protein cbib | EQ875_01824 | Not Available | Positive | 2026334 - 2027293 | 35646.1 |
| vitamin b12-binding protein | EQ875_01825 | Not Available | Positive | 2027294 - 2028127 | 31177.2 |
| hypothetical protein | EQ875_01826 | Not Available | Positive | 2028244 - 2028858 | 21720.4 |
| hypothetical protein | EQ875_01827 | Not Available | Negative | 2028942 - 2029547 | 22371.3 |
| tyrosine--trna ligase | EQ875_01828 | Not Available | Negative | 2029648 - 2030835 | 44348.7 |
| murein dd-endopeptidase mepm | EQ875_01829 | Not Available | Positive | 2030963 - 2032264 | 48600.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


