Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine kinase | EQ875_01810 | Not Available | Negative | 1999250 - 2000206 | 34550.5 |
| bifunctional aspartokinase/homoserine dehydrogenase 1 | EQ875_01811 | Not Available | Negative | 2000208 - 2002667 | 88514.2 |
| isocitrate dehydrogenase kinase/phosphatase | EQ875_01812 | Not Available | Positive | 2003037 - 2004761 | 67041.3 |
| hypothetical protein | EQ875_01813 | Not Available | Positive | 2004872 - 2005339 | 17277.2 |
| putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase | EQ875_01814 | Not Available | Negative | 2005347 - 2005844 | 18085.9 |
| aerobic respiration control protein arca | EQ875_01815 | Not Available | Positive | 2006508 - 2007227 | 27412.9 |
| aerobic respiration control sensor protein arcb | EQ875_01816 | Not Available | Negative | 2007306 - 2009672 | 89239.3 |
| hypothetical protein | EQ875_01817 | Not Available | Negative | 2009813 - 2011624 | 68683.9 |
| hypothetical protein | EQ875_01818 | Not Available | Negative | 2011816 - 2012745 | 34610.5 |
| ferredoxin-dependent glutamate synthase 1 | EQ875_01819 | Not Available | Positive | 2013389 - 2017936 | 167971.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


