Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna1(val) (adenine(37)-n6)-methyltransferase | EQ875_01800 | Not Available | Positive | 1989172 - 1989885 | 25666.7 |
| atp-dependent rna helicase srmb | EQ875_01801 | Not Available | Positive | 1990014 - 1991354 | 50219.4 |
| hypothetical protein | EQ875_01802 | Not Available | Negative | 1991455 - 1992228 | 29132.2 |
| amino-acid carrier protein alst | EQ875_01803 | Not Available | Negative | 1992400 - 1993827 | 51262.2 |
| hypothetical protein | EQ875_01804 | Not Available | Positive | 1994596 - 1994778 | 7512.76 |
| hypothetical protein | EQ875_01805 | Not Available | Negative | 1994843 - 1995373 | 21284.4 |
| uracil-dna glycosylase | EQ875_01806 | Not Available | Negative | 1995483 - 1996142 | 24686.2 |
| endonuclease 4 | EQ875_01807 | Not Available | Negative | 1996197 - 1997039 | 31251.2 |
| autonomous glycyl radical cofactor | EQ875_01808 | Not Available | Positive | 1997405 - 1997782 | 13806.4 |
| threonine synthase | EQ875_01809 | Not Available | Negative | 1997951 - 1999249 | 47074.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


