Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01790 | Not Available | Negative | 1977373 - 1978251 | 32187.8 |
| hypothetical protein | EQ875_01791 | Not Available | Positive | 1978352 - 1978795 | 17117.4 |
| anaerobic nitric oxide reductase transcription regulator norr | EQ875_01792 | Not Available | Negative | 1978861 - 1980177 | 49650.1 |
| lysine--trna ligase | EQ875_01793 | Not Available | Negative | 1980287 - 1981789 | 56956.1 |
| peptide chain release factor rf2 | EQ875_01794 | Not Available | Negative | 1981822 - 1982865 | 38858.1 |
| single-stranded-dna-specific exonuclease recj | EQ875_01795 | Not Available | Negative | 1983079 - 1984803 | 62833.8 |
| thiol:disulfide interchange protein dsbc | EQ875_01796 | Not Available | Negative | 1984908 - 1985639 | 26373.7 |
| tyrosine recombinase xerd | EQ875_01797 | Not Available | Negative | 1985813 - 1986709 | 34466.7 |
| flavodoxin 2 | EQ875_01798 | Not Available | Positive | 1986883 - 1987407 | 19676.0 |
| branched-chain amino acid transport system 2 carrier protein | EQ875_01799 | Not Available | Negative | 1987482 - 1988819 | 47062.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


