Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional activator protein nhar | EQ875_01780 | Not Available | Negative | 1966361 - 1967248 | 34110.3 |
| hypothetical protein | EQ875_01781 | Not Available | Negative | 1967349 - 1967594 | 9008.76 |
| na(+)/h(+) antiporter nhaa | EQ875_01782 | Not Available | Negative | 1967599 - 1968771 | 40704.7 |
| hypothetical protein | EQ875_01783 | Not Available | Positive | 1969259 - 1970404 | 40194.4 |
| thymidylate synthase | EQ875_01784 | Not Available | Negative | 1970571 - 1971422 | 32603.8 |
| prolipoprotein diacylglyceryl transferase | EQ875_01785 | Not Available | Negative | 1971588 - 1972391 | 29898.0 |
| hypothetical protein | EQ875_01786 | Not Available | Negative | 1972436 - 1973242 | 27530.9 |
| phosphoenolpyruvate-dependent phosphotransferase system | EQ875_01787 | Not Available | Negative | 1973262 - 1975520 | 84110.7 |
| rna pyrophosphohydrolase | EQ875_01788 | Not Available | Negative | 1975561 - 1976082 | 20841.0 |
| dna mismatch repair protein muth | EQ875_01789 | Not Available | Positive | 1976708 - 1977376 | 24632.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


