Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase small chain | EQ875_01770 | Not Available | Negative | 1955380 - 1956519 | 40919.6 |
| 4-hydroxy-tetrahydrodipicolinate reductase | EQ875_01771 | Not Available | Negative | 1957064 - 1957870 | 28401.3 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | EQ875_01772 | Not Available | Negative | 1957946 - 1958893 | 34850.5 |
| fkbp-type 16 kda peptidyl-prolyl cis-trans isomerase | EQ875_01773 | Not Available | Negative | 1958907 - 1959341 | 15507.4 |
| lipoprotein signal peptidase | EQ875_01774 | Not Available | Negative | 1959450 - 1959950 | 18666.8 |
| isoleucine--trna ligase | EQ875_01775 | Not Available | Negative | 1959950 - 1962790 | 105743.0 |
| riboflavin biosynthesis protein ribf | EQ875_01776 | Not Available | Negative | 1962796 - 1963758 | 35908.6 |
| putative lipid ii flippase murj | EQ875_01777 | Not Available | Negative | 1963840 - 1965399 | 56686.3 |
| 30s ribosomal protein s20 | EQ875_01778 | Not Available | Positive | 1965610 - 1965870 | 9677.15 |
| transcriptional activator hlyu | EQ875_01779 | Not Available | Negative | 1965961 - 1966263 | 11416.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


