Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglucosamine mutase | EQ875_01760 | Not Available | Negative | 1941421 - 1942758 | 47614.5 |
| dihydropteroate synthase | EQ875_01761 | Not Available | Negative | 1942807 - 1943643 | 30494.9 |
| atp-dependent zinc metalloprotease ftsh | EQ875_01762 | Not Available | Negative | 1943712 - 1945670 | 72210.7 |
| ribosomal rna large subunit methyltransferase e | EQ875_01763 | Not Available | Negative | 1945711 - 1946340 | 23237.1 |
| rna-binding protein yhby | EQ875_01764 | Not Available | Positive | 1946554 - 1946850 | 11124.8 |
| transcription elongation factor grea | EQ875_01765 | Not Available | Negative | 1946983 - 1947456 | 17597.1 |
| porin-like protein l | EQ875_01766 | Not Available | Positive | 1948097 - 1949113 | 36983.4 |
| d-alanyl-d-alanine carboxypeptidase dacb | EQ875_01767 | Not Available | Positive | 1949223 - 1950617 | 51483.3 |
| hypothetical protein | EQ875_01768 | Not Available | Negative | 1950721 - 1951572 | 30337.7 |
| carbamoyl-phosphate synthase large chain | EQ875_01769 | Not Available | Negative | 1952139 - 1955363 | 117725.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


