Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyribonucleotide nucleotidyltransferase | EQ875_01750 | Not Available | Negative | 1931223 - 1933343 | 77056.2 |
| 30s ribosomal protein s15 | EQ875_01751 | Not Available | Negative | 1933694 - 1933963 | 10240.4 |
| trna pseudouridine synthase b | EQ875_01752 | Not Available | Negative | 1934089 - 1935036 | 35005.4 |
| 30s ribosome-binding factor | EQ875_01753 | Not Available | Negative | 1935039 - 1935440 | 15348.4 |
| translation initiation factor if-2 | EQ875_01754 | Not Available | Negative | 1935542 - 1938346 | 102264.0 |
| transcription termination/antitermination protein nusa | EQ875_01755 | Not Available | Negative | 1938376 - 1939860 | 54760.9 |
| ribosome maturation factor rimp | EQ875_01756 | Not Available | Negative | 1939883 - 1940368 | 17822.5 |
| Trna-met | Not Available | Not Available | Positive | 1940519 - 1940595 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1940656 - 1940740 | Not Available |
| protein-export membrane protein secg | EQ875_01759 | Not Available | Negative | 1940753 - 1941097 | 11867.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


