Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribose-phosphate aldolase | EQ875_01730 | Not Available | Negative | 1899351 - 1900127 | 27734.2 |
| hypothetical protein | EQ875_01731 | Not Available | Negative | 1900501 - 1900671 | 5937.52 |
| putative nucleoside permease nupx | EQ875_01732 | Not Available | Negative | 1900912 - 1902189 | 43828.6 |
| putative metal-dependent hydrolase yjjv | EQ875_01733 | Not Available | Negative | 1902422 - 1903216 | 29127.4 |
| glycogen operon protein glgx | EQ875_01734 | Not Available | Negative | 1903314 - 1905392 | 79316.0 |
| hypothetical protein | EQ875_01735 | Not Available | Negative | 1905531 - 1907453 | 72206.3 |
| outer membrane efflux protein bepc | EQ875_01736 | Not Available | Negative | 1907509 - 1908915 | 51741.4 |
| type i secretion system membrane fusion protein prse | EQ875_01737 | Not Available | Negative | 1908941 - 1910323 | 51541.6 |
| toxin rtx-i translocation atp-binding protein | EQ875_01738 | Not Available | Negative | 1910320 - 1912497 | 79992.5 |
| 4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylase arnd | EQ875_01739 | Not Available | Negative | 1912560 - 1920503 | 278776.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


