Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01720 | Not Available | Positive | 1887866 - 1888876 | 37458.4 |
| dna repair protein rada | EQ875_01721 | Not Available | Negative | 1888991 - 1890379 | 49300.9 |
| hypothetical protein | EQ875_01722 | Not Available | Positive | 1890474 - 1892828 | 90627.9 |
| putative toxin higb2 | EQ875_01723 | Not Available | Positive | 1892910 - 1893257 | 13098.7 |
| hypothetical protein | EQ875_01724 | Not Available | Positive | 1893260 - 1893562 | 11221.6 |
| phosphoserine phosphatase | EQ875_01725 | Not Available | Negative | 1893725 - 1894726 | 36570.1 |
| putative inner membrane protein smp | EQ875_01726 | Not Available | Positive | 1894917 - 1895531 | 22964.1 |
| purine nucleoside phosphorylase deod-type | EQ875_01727 | Not Available | Negative | 1895657 - 1896382 | 26259.7 |
| phosphopentomutase | EQ875_01728 | Not Available | Negative | 1896527 - 1897747 | 44103.9 |
| thymidine phosphorylase | EQ875_01729 | Not Available | Negative | 1897758 - 1899089 | 47188.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


