Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoid-associated protein yejk | EQ875_01700 | Not Available | Positive | 1864252 - 1865352 | 41369.9 |
| hypothetical protein | EQ875_01701 | Not Available | Positive | 1865356 - 1866576 | 45683.8 |
| hypothetical protein | EQ875_01702 | Not Available | Positive | 1866703 - 1867176 | 17658.8 |
| hypothetical protein | EQ875_01703 | Not Available | Positive | 1867178 - 1867348 | 6797.59 |
| hypothetical protein | EQ875_01704 | Not Available | Positive | 1867723 - 1867971 | 9338.17 |
| hypothetical protein | EQ875_01705 | Not Available | Positive | 1867971 - 1868348 | 14560.6 |
| hypothetical protein | EQ875_01706 | Not Available | Negative | 1868625 - 1870322 | 64966.4 |
| hypothetical protein | EQ875_01707 | Not Available | Positive | 1870503 - 1871087 | 21789.5 |
| uvrabc system protein b | EQ875_01708 | Not Available | Positive | 1871080 - 1873494 | 92657.4 |
| arginine/agmatine antiporter | EQ875_01709 | Not Available | Positive | 1873978 - 1875324 | 47250.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


