Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein assembly factor bame | EQ875_01690 | Not Available | Positive | 1855984 - 1856340 | 13481.3 |
| hypothetical protein | EQ875_01691 | Not Available | Negative | 1856446 - 1856742 | 11345.7 |
| ribosome association toxin rata | EQ875_01692 | Not Available | Negative | 1856732 - 1857166 | 15870.2 |
| ssra-binding protein | EQ875_01693 | Not Available | Positive | 1857360 - 1857842 | 18048.9 |
| Tmrna,resume consensus sequence (at 85): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 1857965 - 1858334 | Not Available |
| prophage integrase inta | EQ875_01695 | Not Available | Positive | 1858543 - 1859736 | 45438.0 |
| hypothetical protein | EQ875_01696 | Not Available | Positive | 1859750 - 1860457 | 26657.2 |
| hypothetical protein | EQ875_01697 | Not Available | Positive | 1860521 - 1860763 | 9050.91 |
| hypothetical protein | EQ875_01698 | Not Available | Positive | 1860775 - 1861299 | 20377.5 |
| hypothetical protein | EQ875_01699 | Not Available | Positive | 1861369 - 1863855 | 93214.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


