Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01680 | Not Available | Negative | 1841621 - 1843021 | 51595.6 |
| hypothetical protein | EQ875_01681 | Not Available | Negative | 1843022 - 1844230 | 45875.0 |
| hypothetical protein | EQ875_01682 | Not Available | Negative | 1844227 - 1846326 | 77976.9 |
| hypothetical protein | EQ875_01683 | Not Available | Negative | 1846343 - 1846882 | 19963.2 |
| hypothetical protein | EQ875_01684 | Not Available | Negative | 1846884 - 1848218 | 51311.2 |
| chaperone protein dnaj | EQ875_01685 | Not Available | Negative | 1848780 - 1849919 | 40982.6 |
| chaperone protein dnak | EQ875_01686 | Not Available | Negative | 1850016 - 1851932 | 68850.5 |
| protein grpe | EQ875_01687 | Not Available | Negative | 1852147 - 1852767 | 22934.1 |
| nad kinase | EQ875_01688 | Not Available | Positive | 1852987 - 1853868 | 32224.7 |
| dna repair protein recn | EQ875_01689 | Not Available | Positive | 1854061 - 1855728 | 62215.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


