Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase b | EQ875_00065 | Not Available | Positive | 67049 - 68335 | 45801.7 |
| peptidase b | EQ875_00066 | Not Available | Positive | 68394 - 69671 | 45524.8 |
| nucleoside diphosphate kinase | EQ875_00067 | Not Available | Positive | 69773 - 70198 | 15730.8 |
| dual-specificity rna methyltransferase rlmn | EQ875_00068 | Not Available | Positive | 70581 - 71699 | 42007.8 |
| hypothetical protein | EQ875_00069 | Not Available | Positive | 71753 - 72508 | 28753.2 |
| cytoskeleton protein rodz | EQ875_00070 | Not Available | Positive | 72501 - 73484 | 35693.6 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) | EQ875_00071 | Not Available | Positive | 73498 - 74619 | 41007.4 |
| histidine--trna ligase | EQ875_00072 | Not Available | Positive | 74716 - 75984 | 47379.0 |
| hypothetical protein | EQ875_00073 | Not Available | Positive | 75998 - 76612 | 22332.3 |
| outer membrane protein assembly factor bamb | EQ875_00074 | Not Available | Positive | 76624 - 77787 | 41238.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


