Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01563 | Not Available | Negative | 1743111 - 1743461 | 13026.5 |
| hypothetical protein | EQ875_01564 | Not Available | Positive | 1744137 - 1745078 | 35388.5 |
| carbamoyltransferase hypf | EQ875_01565 | Not Available | Positive | 1745232 - 1747592 | 87948.1 |
| hypothetical protein | EQ875_01566 | Not Available | Positive | 1747622 - 1747876 | 9323.46 |
| hydrogenase maturation factor hypd | EQ875_01567 | Not Available | Positive | 1747876 - 1749000 | 41141.1 |
| carbamoyl dehydratase hype | EQ875_01568 | Not Available | Positive | 1749011 - 1750003 | 35636.7 |
| n-ethylmaleimide reductase | EQ875_01569 | Not Available | Negative | 1750087 - 1751121 | 38861.2 |
| thiol-disulfide oxidoreductase resa | EQ875_01570 | Not Available | Negative | 1751124 - 1751669 | 20301.4 |
| hth-type transcriptional regulator dmlr | EQ875_01571 | Not Available | Positive | 1751842 - 1752744 | 33137.9 |
| hypothetical protein | EQ875_01572 | Not Available | Negative | 1752806 - 1753642 | 31767.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


