Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01553 | Not Available | Positive | 1734476 - 1734676 | 7197.65 |
| Trna-ser | Not Available | Not Available | Positive | 1734885 - 1734975 | Not Available |
| hypothetical protein | EQ875_01555 | Not Available | Negative | 1735061 - 1735609 | 20025.7 |
| hypothetical protein | EQ875_01556 | Not Available | Negative | 1735709 - 1736266 | 20726.6 |
| inner membrane protein ydgc | EQ875_01557 | Not Available | Positive | 1736590 - 1736940 | 12593.0 |
| Trna-ser | Not Available | Not Available | Positive | 1737071 - 1737161 | Not Available |
| hth-type transcriptional regulator galr | EQ875_01559 | Not Available | Negative | 1737258 - 1738250 | 36693.2 |
| malate-2h(+)/na(+)-lactate antiporter | EQ875_01560 | Not Available | Positive | 1738428 - 1739885 | 51040.6 |
| cystathionine beta-lyase patb | EQ875_01561 | Not Available | Positive | 1739944 - 1741113 | 44661.1 |
| hypothetical protein | EQ875_01562 | Not Available | Negative | 1741250 - 1742722 | 54853.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


