Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01543 | Not Available | Negative | 1722847 - 1723779 | 34992.5 |
| hypothetical protein | EQ875_01544 | Not Available | Positive | 1723970 - 1724344 | 14153.8 |
| hypothetical protein | EQ875_01545 | Not Available | Positive | 1724507 - 1725229 | 26318.8 |
| hypothetical protein | EQ875_01546 | Not Available | Positive | 1725380 - 1726258 | 32973.2 |
| hypothetical protein | EQ875_01547 | Not Available | Positive | 1726433 - 1726798 | 12951.0 |
| lon protease | EQ875_01548 | Not Available | Positive | 1727421 - 1729793 | 88666.7 |
| peptide methionine sulfoxide reductase msra | EQ875_01549 | Not Available | Negative | 1729869 - 1730498 | 23290.3 |
| hypothetical protein | EQ875_01550 | Not Available | Negative | 1730516 - 1732678 | 83911.4 |
| pyridoxal kinase pdxy | EQ875_01551 | Not Available | Negative | 1732885 - 1733739 | 30931.3 |
| hypothetical protein | EQ875_01552 | Not Available | Positive | 1734011 - 1734127 | 4712.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


