Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline trimethylamine-lyase | EQ875_01533 | Not Available | Negative | 1711801 - 1714224 | 89552.2 |
| 4-hydroxyphenylacetate decarboxylase activating enzyme | EQ875_01534 | Not Available | Negative | 1714227 - 1715168 | 35358.4 |
| fructose-6-phosphate aldolase 1 | EQ875_01535 | Not Available | Positive | 1715414 - 1716088 | 24304.5 |
| hypothetical protein | EQ875_01536 | Not Available | Positive | 1716097 - 1716288 | 7373.92 |
| hypothetical protein | EQ875_01537 | Not Available | Positive | 1717544 - 1717861 | 11684.8 |
| hypothetical protein | EQ875_01538 | Not Available | Positive | 1718116 - 1718355 | 9365.93 |
| hypothetical protein | EQ875_01539 | Not Available | Negative | 1718572 - 1718670 | 3637.1 |
| hypothetical protein | EQ875_01540 | Not Available | Negative | 1719059 - 1719955 | 35241.3 |
| hypothetical protein | EQ875_01541 | Not Available | Negative | 1720058 - 1721464 | 50064.8 |
| opine dehydrogenase | EQ875_01542 | Not Available | Negative | 1721535 - 1722644 | 40175.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


