Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01513 | Not Available | Positive | 1691424 - 1691768 | 12742.3 |
| lipoprotein nlpe | EQ875_01514 | Not Available | Positive | 1691945 - 1692370 | 15210.8 |
| hypothetical protein | EQ875_01515 | Not Available | Negative | 1692759 - 1692857 | 3675.33 |
| hypothetical protein | EQ875_01516 | Not Available | Positive | 1693618 - 1694532 | 36410.9 |
| hypothetical protein | EQ875_01517 | Not Available | Negative | 1695355 - 1696491 | 43884.1 |
| hypothetical protein | EQ875_01518 | Not Available | Positive | 1696697 - 1697281 | 21308.8 |
| transcriptional regulatory protein ompr | EQ875_01519 | Not Available | Positive | 1697398 - 1698123 | 27197.7 |
| hypothetical protein | EQ875_01520 | Not Available | Negative | 1698186 - 1698500 | 11651.5 |
| osmolarity sensor protein envz | EQ875_01521 | Not Available | Positive | 1698748 - 1700193 | 54830.9 |
| putative sugar-binding periplasmic protein | EQ875_01522 | Not Available | Positive | 1700205 - 1701458 | 45929.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


