Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-acetyltransferase | EQ875_01503 | Not Available | Positive | 1681753 - 1682436 | 25382.1 |
| hypothetical protein | EQ875_01504 | Not Available | Positive | 1682455 - 1683726 | 49180.6 |
| hypothetical protein | EQ875_01505 | Not Available | Positive | 1683692 - 1684582 | 34182.2 |
| hypothetical protein | EQ875_01506 | Not Available | Negative | 1684575 - 1684988 | 15557.7 |
| hypothetical protein | EQ875_01507 | Not Available | Negative | 1685055 - 1685291 | 9427.34 |
| quaternary ammonium compound-resistance protein qacc | EQ875_01508 | Not Available | Negative | 1685331 - 1685660 | 11676.8 |
| k(+)/h(+) antiporter nhap2 | EQ875_01509 | Not Available | Negative | 1685852 - 1687642 | 65586.1 |
| hth-type transcriptional regulator dmlr | EQ875_01510 | Not Available | Positive | 1687868 - 1688806 | 35171.2 |
| multidrug export protein mepa | EQ875_01511 | Not Available | Negative | 1688833 - 1690206 | 49994.5 |
| hypothetical protein | EQ875_01512 | Not Available | Positive | 1690310 - 1691188 | 33242.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


