Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase 1 | EQ875_01493 | Not Available | Negative | 1669667 - 1671661 | 72096.0 |
| transaldolase b | EQ875_01494 | Not Available | Negative | 1671760 - 1672710 | 34810.6 |
| hypothetical protein | EQ875_01495 | Not Available | Negative | 1673206 - 1674702 | 57058.2 |
| purine nucleoside phosphorylase deod-type | EQ875_01496 | Not Available | Negative | 1674942 - 1675652 | 25792.1 |
| hypothetical protein | EQ875_01497 | Not Available | Positive | 1676225 - 1676980 | 29338.0 |
| hypothetical protein | EQ875_01498 | Not Available | Positive | 1677042 - 1677248 | 7771.17 |
| hypothetical protein | EQ875_01499 | Not Available | Positive | 1677464 - 1678330 | 31882.3 |
| hypothetical protein | EQ875_01500 | Not Available | Positive | 1678343 - 1679470 | 42915.0 |
| hypothetical protein | EQ875_01501 | Not Available | Positive | 1679482 - 1680561 | 39747.6 |
| hypothetical protein | EQ875_01502 | Not Available | Positive | 1680647 - 1681723 | 41149.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


