Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol-1-monophosphatase | EQ875_00055 | Not Available | Negative | 59137 - 59940 | 28900.6 |
| trna (cytidine/uridine-2'-o-)-methyltransferase trmj | EQ875_00056 | Not Available | Positive | 60210 - 60941 | 26869.7 |
| hth-type transcriptional regulator iscr | EQ875_00057 | Not Available | Positive | 61052 - 61573 | 18480.0 |
| cysteine desulfurase iscs | EQ875_00058 | Not Available | Positive | 61605 - 62819 | 44906.6 |
| iron-sulfur cluster assembly scaffold protein iscu | EQ875_00059 | Not Available | Positive | 62857 - 63243 | 13687.2 |
| iron-binding protein isca | EQ875_00060 | Not Available | Positive | 63261 - 63584 | 11528.7 |
| co-chaperone protein hscb | EQ875_00061 | Not Available | Positive | 63660 - 64175 | 20247.0 |
| chaperone protein hsca | EQ875_00062 | Not Available | Positive | 64310 - 66163 | 65981.8 |
| 2fe-2s ferredoxin | EQ875_00063 | Not Available | Positive | 66166 - 66504 | 12307.5 |
| protein iscx | EQ875_00064 | Not Available | Positive | 66561 - 66761 | 7813.19 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


