Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01463 | Not Available | Positive | 1630899 - 1632530 | 59895.9 |
| hypothetical protein | EQ875_01464 | Not Available | Positive | 1632719 - 1634257 | 58775.5 |
| d-tagatose-1,6-bisphosphate aldolase subunit gaty | EQ875_01465 | Not Available | Positive | 1634538 - 1635392 | 31329.6 |
| 2-dehydro-3-deoxygluconokinase | EQ875_01466 | Not Available | Positive | 1635538 - 1636512 | 36230.4 |
| putative khg/kdpg aldolase | EQ875_01467 | Not Available | Positive | 1636502 - 1637137 | 22730.7 |
| protein/nucleic acid deglycase 3 | EQ875_01468 | Not Available | Positive | 1637147 - 1637725 | 21532.7 |
| hypothetical protein | EQ875_01469 | Not Available | Positive | 1637959 - 1639494 | 56191.2 |
| putative transcriptional regulatory protein | EQ875_01470 | Not Available | Negative | 1639646 - 1640368 | 26673.7 |
| hth-type transcriptional regulator kipr | EQ875_01471 | Not Available | Positive | 1640759 - 1641487 | 26634.2 |
| formimidoylglutamase | EQ875_01472 | Not Available | Positive | 1641533 - 1642504 | 36002.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


