Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01453 | Not Available | Negative | 1618686 - 1619057 | 13839.3 |
| hypothetical protein | EQ875_01454 | Not Available | Negative | 1619122 - 1619367 | 9548.4 |
| putative d-xylose utilization operon transcriptional repressor | EQ875_01455 | Not Available | Negative | 1619502 - 1620155 | 24837.3 |
| hypothetical protein | EQ875_01456 | Not Available | Positive | 1620309 - 1620638 | 11996.7 |
| altronate dehydratase | EQ875_01457 | Not Available | Positive | 1620638 - 1621813 | 41718.5 |
| hypothetical protein | EQ875_01458 | Not Available | Positive | 1621864 - 1622820 | 33721.1 |
| xanthan lyase | EQ875_01459 | Not Available | Positive | 1623086 - 1625506 | 90972.8 |
| manganese efflux pump mntp | EQ875_01460 | Not Available | Negative | 1625546 - 1626100 | 20062.2 |
| chondroitin sulfate abc exolyase | EQ875_01461 | Not Available | Negative | 1626235 - 1629315 | 114524.0 |
| anaerobic sulfatase-maturating enzyme | EQ875_01462 | Not Available | Positive | 1629575 - 1630828 | 47185.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


