Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts system mannose-specific eiiab component | EQ875_01443 | Not Available | Positive | 1610467 - 1610967 | 18145.8 |
| n-acetylgalactosamine permease iic component 1 | EQ875_01444 | Not Available | Positive | 1611002 - 1611766 | 26893.5 |
| pts system mannose-specific eiid component | EQ875_01445 | Not Available | Positive | 1611756 - 1612649 | 32112.9 |
| pts system mannose-specific eiiab component | EQ875_01446 | Not Available | Positive | 1612710 - 1613153 | 15653.0 |
| n-acetylgalactosamine-6-phosphate deacetylase | EQ875_01447 | Not Available | Positive | 1613155 - 1614309 | 41526.6 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | EQ875_01448 | Not Available | Positive | 1614342 - 1615172 | 31052.0 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase | EQ875_01449 | Not Available | Positive | 1615272 - 1616030 | 26870.1 |
| hypothetical protein | EQ875_01450 | Not Available | Positive | 1616048 - 1617091 | 39408.4 |
| hypothetical protein | EQ875_01451 | Not Available | Positive | 1617160 - 1617879 | 27142.2 |
| hypothetical protein | EQ875_01452 | Not Available | Negative | 1617933 - 1618610 | 24749.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


