Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01433 | Not Available | Negative | 1599840 - 1600613 | 30791.6 |
| hypothetical protein | EQ875_01434 | Not Available | Positive | 1600864 - 1601799 | 36312.7 |
| diacylglycerol kinase | EQ875_01435 | Not Available | Positive | 1601796 - 1602155 | 12772.0 |
| response regulator pled | EQ875_01436 | Not Available | Negative | 1602283 - 1603503 | 45902.3 |
| threonine efflux protein | EQ875_01437 | Not Available | Positive | 1603654 - 1604280 | 22937.8 |
| oligogalacturonate-specific porin kdgm | EQ875_01438 | Not Available | Negative | 1604363 - 1605088 | 28515.3 |
| choline-sulfatase | EQ875_01439 | Not Available | Negative | 1605186 - 1606739 | 58957.7 |
| glucitol operon repressor | EQ875_01440 | Not Available | Positive | 1607159 - 1607935 | 28120.7 |
| d-tagatose-1,6-bisphosphate aldolase subunit kbaz | EQ875_01441 | Not Available | Positive | 1607985 - 1609265 | 47336.9 |
| putative d-galactosamine-6-phosphate deaminase agas | EQ875_01442 | Not Available | Positive | 1609276 - 1610448 | 43179.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


