Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01413 | Not Available | Positive | 1578324 - 1578719 | 14606.5 |
| atp synthase subunit a | EQ875_01414 | Not Available | Positive | 1578721 - 1579488 | 29146.7 |
| atp synthase subunit c | EQ875_01415 | Not Available | Positive | 1579536 - 1579772 | 7940.13 |
| atp synthase subunit b | EQ875_01416 | Not Available | Positive | 1579821 - 1580291 | 17740.3 |
| atp synthase subunit delta | EQ875_01417 | Not Available | Positive | 1580306 - 1580854 | 20313.4 |
| atp synthase subunit alpha | EQ875_01418 | Not Available | Positive | 1580867 - 1582408 | 55494.5 |
| atp synthase gamma chain | EQ875_01419 | Not Available | Positive | 1582452 - 1583324 | 32449.1 |
| atp synthase subunit beta | EQ875_01420 | Not Available | Positive | 1583345 - 1584730 | 49982.0 |
| atp synthase epsilon chain | EQ875_01421 | Not Available | Positive | 1584741 - 1585181 | 15537.7 |
| superoxide dismutase | EQ875_01422 | Not Available | Negative | 1585595 - 1586110 | 17920.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


