Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yiav | EQ875_01403 | Not Available | Negative | 1567228 - 1568361 | 42191.1 |
| inner membrane protein yiaw | EQ875_01404 | Not Available | Negative | 1568362 - 1568751 | 15232.2 |
| 6-phosphogluconate phosphatase | EQ875_01405 | Not Available | Negative | 1569014 - 1569703 | 25450.5 |
| hypothetical protein | EQ875_01406 | Not Available | Negative | 1569882 - 1570337 | 17652.8 |
| chloramphenicol acetyltransferase | EQ875_01407 | Not Available | Positive | 1570420 - 1571076 | 24747.4 |
| trans-2-enoyl-coa reductase | EQ875_01408 | Not Available | Negative | 1571127 - 1572329 | 44699.5 |
| acetate kinase | EQ875_01409 | Not Available | Positive | 1572633 - 1573826 | 43212.8 |
| hypothetical protein | EQ875_01410 | Not Available | Negative | 1574460 - 1575587 | 42408.0 |
| hth-type transcriptional activator rhas | EQ875_01411 | Not Available | Negative | 1575835 - 1576851 | 38608.9 |
| hypothetical protein | EQ875_01412 | Not Available | Negative | 1576999 - 1577826 | 31020.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


