Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylgalactosamine permease iic component 1 | EQ875_01393 | Not Available | Positive | 1557029 - 1557811 | 27455.4 |
| pts system mannose-specific eiid component | EQ875_01394 | Not Available | Positive | 1557801 - 1558685 | 32013.9 |
| pts system mannose-specific eiiab component | EQ875_01395 | Not Available | Positive | 1558753 - 1559187 | 15455.8 |
| hth-type transcriptional regulator trer | EQ875_01396 | Not Available | Positive | 1559310 - 1560260 | 34607.7 |
| inorganic pyrophosphatase | EQ875_01397 | Not Available | Negative | 1560262 - 1560933 | 24374.9 |
| pts system trehalose-specific eiibc component | EQ875_01398 | Not Available | Positive | 1561236 - 1562690 | 52050.0 |
| trehalose-6-phosphate hydrolase | EQ875_01399 | Not Available | Positive | 1562758 - 1564431 | 64793.3 |
| ubiquinone biosynthesis o-methyltransferase | EQ875_01400 | Not Available | Negative | 1564452 - 1565222 | 29497.3 |
| hypothetical protein | EQ875_01401 | Not Available | Negative | 1565310 - 1566233 | 34139.5 |
| dna protection during starvation protein | EQ875_01402 | Not Available | Positive | 1566584 - 1567117 | 20536.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


