Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01383 | Not Available | Positive | 1545137 - 1546027 | 32382.1 |
| hth-type transcriptional regulator dmlr | EQ875_01384 | Not Available | Positive | 1546204 - 1547112 | 34268.5 |
| serine transporter | EQ875_01385 | Not Available | Negative | 1547192 - 1548520 | 48545.7 |
| hypothetical protein | EQ875_01386 | Not Available | Negative | 1549092 - 1550396 | 45142.6 |
| guanine/hypoxanthine permease ghxp | EQ875_01387 | Not Available | Positive | 1550857 - 1552218 | 46560.4 |
| putative protein yxei | EQ875_01388 | Not Available | Positive | 1552382 - 1553473 | 39997.3 |
| hypothetical protein | EQ875_01389 | Not Available | Positive | 1553963 - 1554145 | 6833.26 |
| hypothetical protein | EQ875_01390 | Not Available | Negative | 1554348 - 1555283 | 36379.1 |
| glucitol operon repressor | EQ875_01391 | Not Available | Positive | 1555687 - 1556463 | 28630.2 |
| pts system fructose-specific eiib component | EQ875_01392 | Not Available | Positive | 1556536 - 1557009 | 17591.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


