Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01373 | Not Available | Positive | 1529167 - 1531092 | 72790.4 |
| putative phosphatase ycdx | EQ875_01374 | Not Available | Negative | 1531991 - 1532737 | 27294.1 |
| trna(met) cytidine acetyltransferase tmca | EQ875_01375 | Not Available | Negative | 1532721 - 1534838 | 79512.1 |
| hypothetical protein | EQ875_01376 | Not Available | Negative | 1534959 - 1535933 | 36241.0 |
| plasmid partition protein a | EQ875_01377 | Not Available | Negative | 1535937 - 1537151 | 45956.2 |
| hypothetical protein | EQ875_01378 | Not Available | Positive | 1538350 - 1540350 | 75946.4 |
| hypothetical protein | EQ875_01379 | Not Available | Positive | 1540452 - 1542722 | 84189.5 |
| hth-type transcriptional regulator nimr | EQ875_01380 | Not Available | Negative | 1542933 - 1543727 | 30679.2 |
| hypothetical protein | EQ875_01381 | Not Available | Positive | 1543886 - 1544278 | 14280.9 |
| hypothetical protein | EQ875_01382 | Not Available | Positive | 1544400 - 1544945 | 20816.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


