Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01363 | Not Available | Positive | 1515134 - 1516474 | 49877.7 |
| hypothetical protein | EQ875_01364 | Not Available | Positive | 1517081 - 1518139 | 38282.9 |
| hypothetical protein | EQ875_01365 | Not Available | Positive | 1518270 - 1519592 | 48688.0 |
| hypothetical protein | EQ875_01366 | Not Available | Negative | 1519810 - 1519926 | 4623.71 |
| high-affinity proline transporter putp | EQ875_01367 | Not Available | Negative | 1520066 - 1521562 | 53166.5 |
| hypothetical protein | EQ875_01368 | Not Available | Negative | 1521731 - 1522396 | 24599.9 |
| bifunctional protein puta | EQ875_01369 | Not Available | Negative | 1522396 - 1525539 | 116248.0 |
| hth-type transcriptional activator rhas | EQ875_01370 | Not Available | Negative | 1525829 - 1526596 | 28629.2 |
| hypothetical protein | EQ875_01371 | Not Available | Positive | 1527550 - 1528260 | 26871.4 |
| pyridoxine/pyridoxamine 5'-phosphate oxidase | EQ875_01372 | Not Available | Negative | 1528282 - 1528920 | 24549.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


