Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01353 | Not Available | Negative | 1502534 - 1502830 | 11514.8 |
| hypothetical protein | EQ875_01354 | Not Available | Positive | 1503382 - 1503501 | 4394.55 |
| hypothetical protein | EQ875_01355 | Not Available | Positive | 1503811 - 1504107 | 11521.6 |
| hypothetical protein | EQ875_01356 | Not Available | Positive | 1504304 - 1504633 | 12069.5 |
| hypothetical protein | EQ875_01357 | Not Available | Negative | 1504694 - 1506091 | 51779.3 |
| hypothetical protein | EQ875_01358 | Not Available | Negative | 1506463 - 1507227 | 28090.8 |
| hypothetical protein | EQ875_01359 | Not Available | Positive | 1507512 - 1508843 | 50212.2 |
| membrane-bound lytic murein transglycosylase c | EQ875_01360 | Not Available | Positive | 1508963 - 1510090 | 42720.7 |
| hypothetical protein | EQ875_01361 | Not Available | Positive | 1510364 - 1514302 | 143187.0 |
| riboflavin biosynthesis protein ribd | EQ875_01362 | Not Available | Negative | 1514430 - 1514867 | 15384.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


