Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose import atp-binding protein rbsa | EQ875_01343 | Not Available | Positive | 1490322 - 1491827 | 54784.5 |
| ribose import permease protein rbsc | EQ875_01344 | Not Available | Positive | 1491824 - 1492810 | 34536.2 |
| ribose import binding protein rbsb | EQ875_01345 | Not Available | Positive | 1492884 - 1493762 | 30677.0 |
| ribokinase | EQ875_01346 | Not Available | Positive | 1493930 - 1494850 | 32100.5 |
| ribose operon repressor | EQ875_01347 | Not Available | Positive | 1495037 - 1496041 | 37367.1 |
| hypothetical protein | EQ875_01348 | Not Available | Positive | 1496189 - 1496308 | 4762.99 |
| hypothetical protein | EQ875_01349 | Not Available | Negative | 1496373 - 1497071 | 26853.4 |
| aminomethyltransferase | EQ875_01350 | Not Available | Negative | 1497445 - 1498563 | 40869.8 |
| glycine cleavage system h protein | EQ875_01351 | Not Available | Positive | 1498845 - 1499228 | 13596.7 |
| glycine dehydrogenase (decarboxylating) | EQ875_01352 | Not Available | Positive | 1499349 - 1502222 | 105627.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


