Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional repressor comr | EQ875_01323 | Not Available | Positive | 1467178 - 1467765 | 21797.1 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | EQ875_01324 | Not Available | Positive | 1468061 - 1468894 | 29301.1 |
| aliphatic sulfonates import atp-binding protein ssub | EQ875_01325 | Not Available | Positive | 1468904 - 1469671 | 28621.7 |
| riboflavin transport system permease protein ribx | EQ875_01326 | Not Available | Positive | 1469664 - 1470467 | 29560.7 |
| putative thiamine biosynthesis protein | EQ875_01327 | Not Available | Positive | 1470502 - 1471449 | 34729.7 |
| aminopyrimidine aminohydrolase | EQ875_01328 | Not Available | Positive | 1471504 - 1472163 | 24883.6 |
| ktr system potassium uptake protein a | EQ875_01329 | Not Available | Positive | 1472578 - 1473240 | 24079.5 |
| ktr system potassium uptake protein b | EQ875_01330 | Not Available | Positive | 1473237 - 1474604 | 49278.8 |
| hypothetical protein | EQ875_01331 | Not Available | Negative | 1474667 - 1475500 | 31851.3 |
| hypothetical protein | EQ875_01332 | Not Available | Positive | 1475711 - 1476322 | 24143.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


